Analyze and Predict

Run BLAST, FASTA, USEARCH, alignments, physicochemical profiling, HMM classification, or 3D prediction from one workspace.

Pick a tool below or jump straight into a tab.

Guided

Wizard

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Search

Similarity

  • BLASTp, BLASTn
  • BLASTp/BLASTn @ NCBI
  • FASTA, FASTS, FASTM
  • USEARCH
MSA

Alignments

  • CLUSTAL
  • MUSCLE
Descriptors

Physicochemical Profile

  • Composition
  • Indices
  • Hydrophobicity plot
  • Wheel representation
HMM

Class prediction

  • Hidden Markov Models
Model

Structure prediction

  • Molecular modeling
History

User jobs

  • View submitted jobs

Search for similar sequences in BACTIBASE (Blast, Fasta or USEARCH)


Please type your sequence: accepted formats are raw, fasta

Multiple sequences alignment (ClustalO or MUSCLE)

Please type your sequence: accepted formats are raw, fasta

Analyze physicochemical profile of a query sequence

Please type your sequence: accepted formats are raw, fasta

Class prediction using HMM database (HMMER)

Please type your sequence: accepted formats are raw, fasta

Predict tertiary structure of query sequence

Please type your sequence: accepted formats are raw, fasta

Consider my sequence as cyclic
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