Bacteriocin: uviB
Accession: BAC090
Classification
Class: Unclassified
Genetics
Gene: uviB
Producer and target organisms
Producer Organism: Clostridium perfringens [Gram-positive]
Taxonomy: Bacteria
FirmicutesClostridiaClostridialesClostridiaceaeClostridium
Target organismsUnavailable data
Description
Mode of action:
May have a role in bacteriocin secretion or immunity.
May have a role in bacteriocin secretion or immunity.
Uniprot and PDB links
UniProt Entry: P15936
PDB EntryUnknown
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=CPN50
MEDLINE=88336297;PubMed=2901768;
Garnier T., Cole S.T.
"Complete nucleotide sequence and genetic organization of the bacteriocinogenic plasmid, pIP404, from Clostridium perfringens.", Plasmid 19:134-150(1988).
MEDLINE=88336297;PubMed=2901768;
Garnier T., Cole S.T.
"Complete nucleotide sequence and genetic organization of the bacteriocinogenic plasmid, pIP404, from Clostridium perfringens.", Plasmid 19:134-150(1988).
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=CPN50
MEDLINE=89039249;PubMed=2460717;
Garnier T., Cole S.T.
"Studies of UV-inducible promoters from Clostridium perfringens in vivo and in vitro.", Mol. Microbiol. 2:607-614(1988).
MEDLINE=89039249;PubMed=2460717;
Garnier T., Cole S.T.
"Studies of UV-inducible promoters from Clostridium perfringens in vivo and in vitro.", Mol. Microbiol. 2:607-614(1988).
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Gene structure
Unknown error type: [8] A non well formed numeric value encountered
| Gene id | Name | Description | Location |
| BACGene346 | bcn | bacteriocin | 8389..10206,1 |
| BACGene347 | bcn | ORF 4 | complement(900..1496) |
| BACGene348 | bcn | ORF 5 | 1832..3052 |
| BACGene349 | bcn | ORF 6 | 3809..4309 |
| BACGene350 | bcn | ORF 7 | 4347..4514 |
| BACGene351 | bcn | ORF 8 | 4919..5488 |
| BACGene352 | bcn | ORF 9 | 5514..5870 |
| BACGene353 | bcn | ORF 10 | complement(5962..6990) |
| BACGene354 | uviAB | bacteriocin | 7301..7858 |
| BACGene355 | uviB | bacteriocin | 7939..8133 |
Protein sequence
| ........10 ........20 ........30 ........40 ........50 | | | | | ILFSYLLFYV LKENSKREDK YQNIIEELTE LLPKIKEDVE DIKEKLNK |
Wheel representation
Protein sequence annotations
| Feature | Position(s) | Length | Description |
| CHAIN | 1↔48 | 48 | Bacteriocin UviB. Feature identifier = PRO_0000002759. |
Composition
| Amino acid | Count | Percent |
|---|---|---|
| A | 0 | 0.00 % |
| C | 0 | 0.00 % |
| D | 3 | 6.25 % |
| E | 8 | 16.67 % |
| F | 2 | 4.17 % |
| G | 0 | 0.00 % |
| H | 0 | 0.00 % |
| I | 5 | 10.42 % |
| K | 8 | 16.67 % |
| L | 8 | 16.67 % |
| M | 0 | 0.00 % |
| N | 3 | 6.25 % |
| P | 1 | 2.08 % |
| Q | 1 | 2.08 % |
| R | 1 | 2.08 % |
| S | 2 | 4.17 % |
| T | 1 | 2.08 % |
| V | 2 | 4.17 % |
| W | 0 | 0.00 % |
| Y | 3 | 6.25 % |
Hydrophobicity
Composition
| Formula | C271
H437
N63
O81
|
| Absent amino acids | ACGHMW |
| Common amino acids | EKL |
| Mass (Da) | 5892.62 |
| Net charge | -2 |
| Isoelectric point | 4.72 |
| Basic residues | 9 |
| Acidic residues | 11 |
| Hydrophobic residues | 17 |
| Polar residues | 9 |
| Aliphatic residues | 15 |
| Tiny residues | 2 |
| Boman Index | -97.21 |
| Hydropathy Index | -0.61 |
| Aliphatic Index | 117.71 |
| Instability Index | 66.87 (unstable) |
| Half Life |
Mammalian : 20 hour Yeast : 30 min E. coli : >10 hour |
| Extinction Coefficient | 4470 M-1 cm-1 |
| Absorbance 280nm | 95.11 |