Bacteriocin: Lichenin
Accession: BAC007
Classification
Class: Unclassified
Genetics
Gene: Unidentified
Producer and target organisms
Producer Organism: Bacillus licheniformis [Gram-positive]
Taxonomy: Bacteria
FirmicutesBacillalesBacillaceaeBacillus
Target organismsUnknown error type: [8] Uninitialized string offset: -1
Has antibacterial activity only against strictly anaerobic rumen bacteria.
Description
Mode of action:
Oxygen labile bacteriocin-like. pH dependence: Optimum pH is 6.8; Temperature dependence: Optimum temperature is 39 degrees Celsius; 72-96 hours of incubation.
Oxygen labile bacteriocin-like. pH dependence: Optimum pH is 6.8; Temperature dependence: Optimum temperature is 39 degrees Celsius; 72-96 hours of incubation.
Uniprot and PDB links
UniProt Entry: P82907
PDB EntryUnknown
PROTEIN SEQUENCE, STRAIN=26L-10/3RA
MEDLINE=21460732;PubMed=11576300;DOI=10.1046/j.1365-2672.2001.01429.x
Pattnaik P., Kaushik J.K., Grover S., Batish V.K.
"Purification and characterization of a bacteriocin-like compound (Lichenin) produced anaerobically by Bacillus licheniformis isolated from water buffalo.", J. Appl. Microbiol. 91:636-645(2001).
MEDLINE=21460732;PubMed=11576300;DOI=10.1046/j.1365-2672.2001.01429.x
Pattnaik P., Kaushik J.K., Grover S., Batish V.K.
"Purification and characterization of a bacteriocin-like compound (Lichenin) produced anaerobically by Bacillus licheniformis isolated from water buffalo.", J. Appl. Microbiol. 91:636-645(2001).
[Ref. 2]
PROTEIN SEQUENCE, STRAIN=26L-10/3RA
Pattnaik P.
"Biochemical characterization and molecular genetics of bacteriocin produced by a selected rumen bacterial isolate.", Thesis (1999), National Dairy Research Institute / Karnal, India.
Pattnaik P.
"Biochemical characterization and molecular genetics of bacteriocin produced by a selected rumen bacterial isolate.", Thesis (1999), National Dairy Research Institute / Karnal, India.
EXPRESSION, STRAIN=26L-10/3RA
PubMed=15881839;DOI=10.1016/j.micres.2005.01.006
Pattnaik P., Grover S., Batish V.K.
"Effect of environmental factors on production of lichenin, a chromosomally encoded bacteriocin-like compound produced by Bacillus licheniformis 26L-10/3RA.", Microbiol. Res. 160:213-218(2005).
PubMed=15881839;DOI=10.1016/j.micres.2005.01.006
Pattnaik P., Grover S., Batish V.K.
"Effect of environmental factors on production of lichenin, a chromosomally encoded bacteriocin-like compound produced by Bacillus licheniformis 26L-10/3RA.", Microbiol. Res. 160:213-218(2005).
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Protein sequence
| ........10 ........20 | | ISLEICXIFH DN |
Wheel representation
Protein sequence annotations
| Feature | Position(s) | Length | Description |
| PEPTIDE | 1↔12 | 12 | Lichenin. Feature identifier = PRO_0000044154. |
Composition
| Amino acid | Count | Percent |
|---|---|---|
| A | 0 | 0.00 % |
| C | 1 | 8.33 % |
| D | 1 | 8.33 % |
| E | 1 | 8.33 % |
| F | 1 | 8.33 % |
| G | 0 | 0.00 % |
| H | 1 | 8.33 % |
| I | 3 | 25.00 % |
| K | 0 | 0.00 % |
| L | 1 | 8.33 % |
| M | 0 | 0.00 % |
| N | 1 | 8.33 % |
| P | 0 | 0.00 % |
| Q | 0 | 0.00 % |
| R | 0 | 0.00 % |
| S | 1 | 8.33 % |
| T | 0 | 0.00 % |
| V | 0 | 0.00 % |
| W | 0 | 0.00 % |
| Y | 0 | 0.00 % |
Hydrophobicity
warning: X is not a standard amino acid.
warning: X is not a standard amino acid.
Composition
| Formula | C58
H88
N14
O17
S1 |
| Absent amino acids | AGKMPQRTVWY |
| Common amino acids | I |
| Mass (Da) | 1413.68 |
| Net charge | -1 |
| Isoelectric point | 4.18 |
| Basic residues | 1 |
| Acidic residues | 2 |
| Hydrophobic residues | 5 |
| Polar residues | 3 |
| Aliphatic residues | 4 |
| Tiny residues | 1 |
| Boman Index | -6.29 |
| Hydropathy Index | 0.68 |
| Aliphatic Index | 130 |
| Instability Index | 23.55 (stable) |
| Half Life |
Mammalian : 20 hour Yeast : 30 min E. coli : >10 hour |
| Extinction Coefficient | 0 M-1 cm-1 |
| Absorbance 280nm | 0 |