Bacteriocin: serracin-P
Accession: BAC002
Classification
Class: Phage-Tail-Like
Genetics
Gene: Unidentified
Producer and target organisms
Producer Organism: Serratia plymuthica [Gram-negative]
Taxonomy: Bacteria
ProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSerratia
Description
Mode of action:
Major component of a prophage tail sheath (Probable).
Major component of a prophage tail sheath (Probable).
Uniprot and PDB links
UniProt Entry: P83375
PDB EntryUnknown
PROTEIN SEQUENCE, AND FUNCTION, STRAIN=J7
MEDLINE=22293561;PubMed=12406768;
Jabrane A., Sabri A., Compere P., Jacques P., Vandenberghe I., Van Beeumen J., Thonart P.
"Characterization of serracin P, a phage-tail-like bacteriocin, and its activity against Erwinia amylovora, the fire blight pathogen.", Appl. Environ. Microbiol. 68:5704-5710(2002).
MEDLINE=22293561;PubMed=12406768;
Jabrane A., Sabri A., Compere P., Jacques P., Vandenberghe I., Van Beeumen J., Thonart P.
"Characterization of serracin P, a phage-tail-like bacteriocin, and its activity against Erwinia amylovora, the fire blight pathogen.", Appl. Environ. Microbiol. 68:5704-5710(2002).
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Protein sequence
| ........10 | DYHHGVRVL |
Warning: N-terminal amino acid sequence of the 43-kDa serracin P subunit.
Wheel representation
Protein sequence annotations
| Feature | Position(s) | Length | Description |
| CHAIN | 1 | Bacteriocin serracin-P 43 kDa subunit. Feature identifier = PRO_0000110582. | |
| NON_TER | 9 |
Composition
| Amino acid | Count | Percent |
|---|---|---|
| A | 0 | 0.00 % |
| C | 0 | 0.00 % |
| D | 1 | 11.11 % |
| E | 0 | 0.00 % |
| F | 0 | 0.00 % |
| G | 1 | 11.11 % |
| H | 2 | 22.22 % |
| I | 0 | 0.00 % |
| K | 0 | 0.00 % |
| L | 1 | 11.11 % |
| M | 0 | 0.00 % |
| N | 0 | 0.00 % |
| P | 0 | 0.00 % |
| Q | 0 | 0.00 % |
| R | 1 | 11.11 % |
| S | 0 | 0.00 % |
| T | 0 | 0.00 % |
| V | 2 | 22.22 % |
| W | 0 | 0.00 % |
| Y | 1 | 11.11 % |
Hydrophobicity
Composition
| Formula | C49
H74
N16
O13
|
| Absent amino acids | ACEFIKMNPQSTW |
| Common amino acids | HV |
| Mass (Da) | 1113.37 |
| Net charge | +2 |
| Isoelectric point | 7.71 |
| Basic residues | 3 |
| Acidic residues | 1 |
| Hydrophobic residues | 3 |
| Polar residues | 2 |
| Aliphatic residues | 3 |
| Tiny residues | 1 |
| Boman Index | -19.16 |
| Hydropathy Index | -0.43 |
| Aliphatic Index | 107.78 |
| Instability Index | 11.08 (stable) |
| Half Life |
Mammalian : 1.1 hour Yeast : 3 min E. coli : >10 hour |
| Extinction Coefficient | 1490 M-1 cm-1 |
| Absorbance 280nm | 186.25 |