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Bacteriocin: Garvicin A

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Bacteriocin: Garvicin A

Accession: BAC219
Classification
Class: IId
Genetics
Gene: lgnA
Producer and target organisms

Producer Organism: Lactococcus garvieae [Gram-positive]

Taxonomy: BacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeLactococcus

Target organismsLactococcus garvieae H14 - Lactococcus garvieae Imau 50094 - Lactococcus garvieae Pw 1537 - Lactococcus garvieae 1205 - Lactococcus garvieae CECT 4531 - Lactococcus garvieae G-34 - Lactococcus garvieae MAM 75 - Lactococcus garvieae MAM 77 - Lactococcus garvieae CP-1 - Lactococcus garvieae BA063090 - Lactococcus garvieae 4876/006 - Lactococcus garvieae 1686 - Lactococcus garvieae 5457 - Lactococcus garvieae 5657 - Lactococcus garvieae 8831 - Lactococcus garvieae LG-2 - Lactococcus garvieae 1204 - Lactococcus garvieae 3AA7 - Lactococcus garvieae 4AB5 - Lactococcus garvieae CAS-2 - Lactococcus garvieae DK 2-25 - Lactococcus garvieae N201 - Lactococcus garvieae T1-1 - Lactococcus garvieae T2-17 - Lactococcus garvieae NRTC0611 - Lactococcus garvieae Lg80 - Lactococcus garvieae 240-88 - Lactococcus garvieae 306/79 - Lactococcus garvieae 364-88 - Lactococcus garvieae BM06/00349 - Lactococcus garvieae 1481/03 - Lactococcus garvieae 2497/03 - Lactococcus garvieae BA06/021331 - Lactococcus garvieae DP1 -

NOTE: not active against Bordetella pertussis NCTC 8616 - Carnobacterium piscicola 02/5685 - Enteroccus faecalis TAB 28 - Enteroccus faecalis CECT 4039 - Enteroccus faecium 29J - Lactobacillus acidophilus ATCC 4356 - Lactobacillus brevis LB9 - Lactobacillus bulgaricus ATCC 11842 - Lactobacillus casei ATCC 334 - Lactobacillus curvatus NCFB 2739 - Lactobacillus delbrueckii CECT 282 - Lactobacillus fermentum ATCC 9338 - Lactobacillus fermentum LC40 - Lactobacillus gasseri 2459 - Lactobacillus hilgardii LB76 - Lactobacillus jensenii 2967 - Lactobacillus pentosus 128/2 - Lactobacillus pentosus IG1 - Lactobacillus plantarum NC8 - Lactobacillus plantarum WCFS1 - Lactobacillus reuteri DSM 20016 - Lactobacillus rhamnosus G32.8 - Lactobacillussakei 148 - Lactobacillus sakei NCFB 2714 - Lactobacillus salivarius HN6 - Lactococcus lactis ATCC 11454 - Lactococcus lactis ESI 153 - Lactococcus lactis subsp. cremoris MG1363 - Lactococcus lactis MG 1614 - Lactococcus lactis subsp. lactis CECT 185 - Lactococcus lactis subsp. lactis IL1403 - Lactococcus lactis subsp. lactis 1585-85 - Listeria monocytogenes 51112 - Listeria monocytogenes Scott A - Listeria monocytogenes CECT 935 (4b) - Listeria monocytogenes CECT 935 (4c) - Pediococcus acidilactici CECT 98 - Pediococcus pentosaceus FBB63 - Salmonella S79 - Staphylococcus aureus CECT 86 - Staphylococcus epidermidis CECT 231 - Streptococcus bovis DSM 20480 - Streptococcus dysgalactiae DSM 20662 - Streptococcus lactaris DSM 23027 - Streptococcus mitis DSM 12643 - Streptococcus oralis CECT 907 - Streptococcus parasanguinis DSM 6778 - Streptococcus peroris DSM 12393 - Streptococcus pyogenes CECT 985 - Streptococcus pneumoniae DSM 20566 - Streptococcus salivarius CECT 805 - Streptococcus termophilus ST20 - Streptococcus uberis CECT 994

Uniprot and PDB links

UniProt Entry: H2B2W4

PDB EntryUnknown

[Ref. 1] | View abstract | Export citation
NUCLEOTIDE SEQUENCE, STRAIN=21881.
PubMed=22768237;DOI=10.1371/journal.pone.0040119
Aguado-Urda M., Gibello A., Blanco M.M., Lopez-Campos G.H., Cutuli M.T., Fernandez-Garayzabal J.F.
"Characterization of plasmids in a human clinical strain of Lactococcus garvieae.", PLoS ONE 7:e40119-e40119(2012).
[Ref. 2] | View abstract | Export citation
NUCLEOTIDE SEQUENCE, STRAIN=21881.
PubMed=23666326;DOI=10.1128/AEM.00830-13
Maldonado-Barragan A., Cardenas N., Martinez B., Ruiz-Barba J.L., Fernandez-Garayzabal J.F., Rodriguez J.M., Gibello A.
"Garvicin A, a Novel Class IId Bacteriocin from Lactococcus garvieae that Inhibits Septum Formation in L. garvieae Strains", Appl. Environ. Microbiol. (2013).
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Protein sequence
 ........10 ........20 ........30 ........40 ........50 
          |          |          |          |          | 
 IGGALGNALN GLGTWANMMN GGGFVNQWQV YANKGKINQY RPY
Wheel representation
wheel representation of Garvicin A
Composition
Hydrophobicity

Composition
Formula C0 H0 N0 O0 S0
Absent amino acids CDEHS
Common amino acids G
Mass (Da) 4678.59
Net charge +3
Isoelectric point 10.18
Basic residues 3
Acidic residues 0
Hydrophobic residues 14
Polar residues 20
Aliphatic residues 7
Tiny residues 13
Boman Index -31.39
Hydropathy Index -0.379
Aliphatic Index 68.14
Instability Index -5.33 (stable)
Half Life Mammalian : 20 hour
Yeast : 30 min
E. coli : >10 hour
Extinction Coefficient 15470 M-1 cm-1
Absorbance 280nm 368.33

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