Bacteriocin: Garvicin ML
Accession: BAC192
Producer Organism: Lactococcus garvieae [Gram-positive]
Taxonomy: BacteriaFirmicutes
Lactobacillales
Streptococcaceae
Lactococcus
Target organismsAntimicrobial activity by the agar diffusion test (ADT) & area of the halos of inhibition in mm2: -
Gram-positive : Lactobacillus reuteri 20016 (378) - Lactobacillus helveticus 15009 (492) - Lactobacillus curvatus 2739 (177) - Lactobacillus casei 334 (1 - 174) - Lactobacillus acidophilus 4356 (236) - Lactobacillus sakei 2714 (1 - 445) - Lactococcus lactis BB24 (928) - Lactococcus lactis NZ9000 (163) - Lactococcus lactis DPC5598 (1 - 541) - Lactococcus garvieae 5274 (617) - Lactococcus garvieae 5806 (2 - 807) - Lactococcus garvieae 5807 (2 - 705) - Lactococcus raffinolactis 988 (228) - Pediococcus acidilactici 347 (1 - 398) - Pediococcus pentosaceus FBB61 (1 - 131) - Enterococcus faecium P13 (1 - 291) - Enterococcus faecium L50 (719) - Enterococcus faecialis DBH18 (25) - Enterococcus faecalis P4 (123) - Propionibacterium sp. P6 (190) - Propionibacterium acidipropionici 563 (864) - Clostridium tyrobutiricum 3.5CT (651) - Clostridium tyrobutiricum 1754 (839) - Clostridium perfringens 376 (352) - Clostridium botulinum 551 (574) - Listeria monocytogenes 4032 (662) - Listeria ivanovii 913 (1 - 020) - Listeria seeligeri 917 (684) - Listeria grayi 931 (742) - Listeria welshimeri 919 (452) - Brochothrix thermosphacta 847 (283) - Streptococcus pneumoniae FQ26 (590) - Streptococcus pneumoniae 67620 (596) - Streptococcus pneumoniae 15M-1047 (790) -
NOTE: Not active against Pseudomonas fluorescens 378 - Escherichia coli JM109 - Escherichia coli MC1000 - Salmonella paratyphi 554 - Salmonella typhimurium 443 - Salmonella enteritidis 4396
UniProt Entry: D2KC49
PDB EntryUnknown
PubMed=21057028;DOI=10.1128/AEM.01173-10
Borrero J., Brede D.A., Skaugen M., Diep D.B., Herranz C., Nes I.F., Cintas L.M., Hernandez P.E.
"Characterization of Garvicin ML, a Novel Circular Bacteriocin Produced by Lactococcus garvieae DCC43, Isolated from Mallard Ducks (Anas platyrhynchos).", Appl Environ Microbiol. (2010).
Borrero J., Brede D.A., Skaugen M., Diep D.B., Herranz C., Nes I.F., Cintas L.M., Hernandez P.E.
"Characterization of garvicin ML, a novel circular bacteriocin produced by Lactococcus garvieae DCC43, isolated from Mallard ducks (Anas platyrhynchos).", Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases.
Gene id | Name | Description | Location |
BACGene885 | garML | garvicin ML precursor circular bacteriocin; antimicrobial peptide | 32..223 |
........10 ........20 ........30 ........40 ........50 ........60 ........70 | | | | | | | LVATGMAAGV AKTIVNAVSA GMDIATALSL FSGAFTAAGG IMALIKKYAQ KKLWKQLIAA |
Feature | Position(s) | Length | Description |
CHAIN | 1↔60 | 60 | garvicin ML. Feature identifier = PRO_5000556423. |
Formula | C0
H0
N0
O0
S0 |
Absent amino acids | CEHPR |
Common amino acids | A |
Mass (Da) | 6 |
Net charge | +5 |
Isoelectric point | 10.85 |
Basic residues | 6 |
Acidic residues | 1 |
Hydrophobic residues | 33 |
Polar residues | 15 |
Aliphatic residues | 15 |
Tiny residues | 24 |
Boman Index | 38.05 |
Hydropathy Index | 0.887 |
Aliphatic Index | 115.83 |
Instability Index | 19.35 (stable) |
Half Life |
Mammalian : 5.5 hour Yeast : 3 min E. coli : 2 min |
Extinction Coefficient | 6990 M-1 cm-1 |
Absorbance 280nm | 118.47 |
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