Bacteriocin: Colicin-E1

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Bacteriocin: Colicin-E1

Accession: BAC130

Classification
Class: Unclassified
Genetics
Gene: cea
Description
The ion-channel forming colicins A, B, E1, Ia, Ib and N all kill bacterial cells selectively by co-opting bacterial active-transport pathways and forming voltage-gated ion conducting channels across the plasma membrane of the target bacterium. The crystal structure of colicin Ia reveals a molecule 210 A long with three distinct functional domains arranged along a backbone of two extraordinarily long alpha-helices. A central domain at the bend of the hairpin-like structure mediates specific recognition and binding to an outer-membrane receptor. A second domain mediates translocation across the outer membrane via the TonB transport pathway; the TonB-box recognition element of colicin Ia is on one side of three 80 A-long helices arranged as a helical sheet. A third domain is made up of 10 alpha-helices which form a voltage-activated and voltage-gated ion conducting channel across the plasma membrane of the target cell. The two 160 A-long alpha-helices that link the receptor-binding domain to the other domains enable the colicin Ia molecule to span the periplasmic space and contact both the outer and plasma membranes simultaneously during function.
Uniprot and PDB links

UniProt Entry: P02978

PDB Entry2I88 resolved by X-ray



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Gene structure
genome of Colicin-E1

Gene idNameDescriptionLocation
BACGene588colicin protein201..1769
BACGene589lysis protein2155..2292
Protein sequence
 ........10 ........20 ........30 ........40 ........50 ........60 ........70 ........80 
          |          |          |          |          |          |          |          | 
 METAVAYYKD GVPYDDKGQV IITLLNGTPD GSGSGGGGGK GGSKSESSAA IHATAKWSTA QLKKTQAEQA ARAKAAAEAQ
 AKAKANRDAL TQRLKDIVNE ALRHNASRTP SATELAHANN AAMQAEDERL RLAKAEEKAR KEAEAAEKAF QEAEQRRKEI
 EREKAETERQ LKLAEAEEKR LAALSEEAKA VEIAQKKLSA AQSEVVKMDG EIKTLNSRLS SSIHARDAEM KTLAGKRNEL
 AQASAKYKEL DELVK

3D Structure
Protein sequence annotations

FeaturePosition(s)LengthDescription
CHAIN1↔522522
Colicin-E1.
Feature identifier = PRO_0000218668.
TRANSMEM471↔48717Helical; (Potential).
TRANSMEM494↔51017Helical; (Potential).
COMPBIAS31↔4212Poly-Gly.
HELIX346↔36217
HELIX365↔37814
HELIX386↔40217
HELIX406↔41611
HELIX422↔4254
HELIX428↔4347
HELIX447↔45711
HELIX461↔47111
HELIX472↔4754
HELIX476↔48813
HELIX494↔50714
HELIX513↔5153
HELIX516↔5205
Composition
Hydrophobicity

Composition
Formula C2504 H4101 N731 O790 S6
Absent amino acids
Common amino acids A
Mass (Da) 57306.93
Net charge +21
Isoelectric point 9.91
Basic residues 94
Acidic residues 73
Hydrophobic residues 192
Polar residues 127
Aliphatic residues 36
Tiny residues 82
Boman Index -1117.77
Hydropathy Index -0.59
Aliphatic Index 83.01
Instability Index 29.08 (stable)
Half Life Mammalian : 30 hour
Yeast : >20 hour
E. coli : >10 hour
Extinction Coefficient 41370 M-1 cm-1
Absorbance 280nm 79.4

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