Bacteriocin: Colicin-E1
Accession: BAC130
Classification
Class: Unclassified
Genetics
Gene: cea
Producer and target organisms
Producer Organism: Escherichia coli [Gram-negative]
Taxonomy: BacteriaProteobacteria
Gammaproteobacteria
Enterobacteriales
Enterobacteriaceae
Escherichia
Target organismsEnterobacteriaceae
Description
The ion-channel forming colicins A, B, E1, Ia, Ib and N all kill bacterial cells selectively by co-opting bacterial active-transport pathways and forming voltage-gated ion conducting channels across the plasma membrane of the target bacterium. The crystal structure of colicin Ia reveals a molecule 210 A long with three distinct functional domains arranged along a backbone of two extraordinarily long alpha-helices. A central domain at the bend of the hairpin-like structure mediates specific recognition and binding to an outer-membrane receptor. A second domain mediates translocation across the outer membrane via the TonB transport pathway; the TonB-box recognition element of colicin Ia is on one side of three 80 A-long helices arranged as a helical sheet. A third domain is made up of 10 alpha-helices which form a voltage-activated and voltage-gated ion conducting channel across the plasma membrane of the target cell. The two 160 A-long alpha-helices that link the receptor-binding domain to the other domains enable the colicin Ia molecule to span the periplasmic space and contact both the outer and plasma membranes simultaneously during function.
Uniprot and PDB links
UniProt Entry: P02978
PDB Entry2I88 resolved by X-ray
Gene structure
Gene id | Name | Description | Location |
BACGene588 | colicin protein | 201..1769 | |
BACGene589 | lysis protein | 2155..2292 |
Protein sequence
........10 ........20 ........30 ........40 ........50 ........60 ........70 ........80 | | | | | | | | METAVAYYKD GVPYDDKGQV IITLLNGTPD GSGSGGGGGK GGSKSESSAA IHATAKWSTA QLKKTQAEQA ARAKAAAEAQ AKAKANRDAL TQRLKDIVNE ALRHNASRTP SATELAHANN AAMQAEDERL RLAKAEEKAR KEAEAAEKAF QEAEQRRKEI EREKAETERQ LKLAEAEEKR LAALSEEAKA VEIAQKKLSA AQSEVVKMDG EIKTLNSRLS SSIHARDAEM KTLAGKRNEL AQASAKYKEL DELVK |
3D Structure
Protein sequence annotations
Feature | Position(s) | Length | Description |
CHAIN | 1↔522 | 522 | Colicin-E1. Feature identifier = PRO_0000218668. |
TRANSMEM | 471↔487 | 17 | Helical; (Potential). |
TRANSMEM | 494↔510 | 17 | Helical; (Potential). |
COMPBIAS | 31↔42 | 12 | Poly-Gly. |
HELIX | 346↔362 | 17 | |
HELIX | 365↔378 | 14 | |
HELIX | 386↔402 | 17 | |
HELIX | 406↔416 | 11 | |
HELIX | 422↔425 | 4 | |
HELIX | 428↔434 | 7 | |
HELIX | 447↔457 | 11 | |
HELIX | 461↔471 | 11 | |
HELIX | 472↔475 | 4 | |
HELIX | 476↔488 | 13 | |
HELIX | 494↔507 | 14 | |
HELIX | 513↔515 | 3 | |
HELIX | 516↔520 | 5 |
Composition
Hydrophobicity
Composition
Formula | C2504
H4101
N731
O790
S6 |
Absent amino acids | |
Common amino acids | A |
Mass (Da) | 57306.93 |
Net charge | +21 |
Isoelectric point | 9.91 |
Basic residues | 94 |
Acidic residues | 73 |
Hydrophobic residues | 192 |
Polar residues | 127 |
Aliphatic residues | 36 |
Tiny residues | 82 |
Boman Index | -1117.77 |
Hydropathy Index | -0.59 |
Aliphatic Index | 83.01 |
Instability Index | 29.08 (stable) |
Half Life |
Mammalian : 30 hour Yeast : >20 hour E. coli : >10 hour |
Extinction Coefficient | 41370 M-1 cm-1 |
Absorbance 280nm | 79.4 |
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