Bacteriocin: Penocin A
Accession: BAC124
Classification
Class: class IIA/YGNGV
Genetics
Gene: PenA
Producer and target organisms
Producer Organism: Pediococcus pentosaceus ATCC 25745 [Gram-positive]
Taxonomy: BacteriaFirmicutes
Bacilli
Lactobacillales
Lactobacillaceae
Pediococcus.
Target organismsCarnobacterium piscicola - Clostridia butyricum - Enterococcus faecium - Enterococcus faecalis - Lactobacillus curvatus - Lactobacillus casei - Lactobacillus sakei - Lactococcus raffinolactis - Leuconostoc mesenteroides - Listeria innocua - Listeria monocytogenes - Pediococcus acidilactici - Pediococcus pentosaceus
Uniprot and PDB links
UniProt Entry: Q03HX9
PDB EntryUnknown
PROTEIN SEQUENCE, STRAIN=ATCC 25745
PubMed=16735728;DOI=10.1099/mic.0.28794-0
Diep DB, Godager L, Brede D, Nes IF.
"Data mining and characterization of a novel pediocin-like bacteriocin system from the genome of Pediococcus pentosaceus ATCC 25745.", Microbiology. 2006 Jun;152(Pt 6):1649-59.
PubMed=16735728;DOI=10.1099/mic.0.28794-0
Diep DB, Godager L, Brede D, Nes IF.
"Data mining and characterization of a novel pediocin-like bacteriocin system from the genome of Pediococcus pentosaceus ATCC 25745.", Microbiology. 2006 Jun;152(Pt 6):1649-59.
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Protein sequence
........10 ........20 ........30 ........40 ........50 | | | | | KYYGNGVHCG KKTCYVDWGQ ATASIGKIIV NGWTQHGPWA HR |
Wheel representation
Composition
Hydrophobicity
Composition
Formula | C212
H312
N62
O56
S2 |
Absent amino acids | EFLM |
Common amino acids | G |
Mass (Da) | 4684.6 |
Net charge | +7 |
Isoelectric point | 9.45 |
Basic residues | 8 |
Acidic residues | 1 |
Hydrophobic residues | 12 |
Polar residues | 18 |
Aliphatic residues | 6 |
Tiny residues | 11 |
Boman Index | -47.27 |
Hydropathy Index | -0.586 |
Aliphatic Index | 7.93 |
Instability Index | -23.82 (stable) |
Half Life |
Mammalian : 1.3 hour Yeast : 3 min E. coli : 2 min |
Extinction Coefficient | 21095 M-1 cm-1 |
Absorbance 280nm | 514.51 |
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