Bacteriocin: Plantaricin NC8 β

Default view

Bacteriocin: Plantaricin NC8 β

Accession: BAC103

Classification
Class: Unclassified
Genetics
Gene: plnc8B
Producer and target organisms

Producer Organism: Lactobacillus plantarum [Gram-positive]

Taxonomy: BacteriaFirmicutesLactobacillalesLactobacillaceaeLactobacillus

Target organismsUnavailable data

NUCLEOTIDE SEQUENCE, STRAIN=NC8
PubMed=14973042;DOI=10.1128/JB.186.5.1556-1564.2004
Maldonado A., Jimenez-Diaz R., Ruiz-Barba J.L.
"Induction of plantaricin production in Lactobacillus plantarum NC8 after coculture with specific gram-positive bacteria is mediated by an autoinduction mechanism.", J. Bacteriol. 186:1556-1564(2004).
NUCLEOTIDE SEQUENCE, STRAIN=NC8
MEDLINE=22401440;PubMed=12514019;DOI=10.1128/AEM.69.1.383-389.2003
Maldonado A., Ruiz-Barba J.L., Jimenez-Diaz R.
"Purification and genetic characterization of plantaricin NC8, a novel coculture-inducible two-peptide bacteriocin from Lactobacillus plantarum NC8.", Appl. Environ. Microbiol. 69:383-389(2003).
NUCLEOTIDE SEQUENCE, STRAIN=J51
Navarro L., Saenz Y., Rojo B., Zarazaga M., Ruiz-Larrea F., Torres C.
"Genetic characterization of the pln locus in the bacteriocin-producer Lactobacillus plantarum strain J51 of wine origin.", Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases.
Loading...
End Note
Reference Manager
BibTeX
Gene structure
genome of Plantaricin NC8 β

Gene idNameDescriptionLocation
BACGene444brnQ1branched-chain amino acid transport protein355..1731
BACGene445napA1Na(+)/H(+) antiporter1764..2960
BACGene446plnc8Bplantaricin NC8 beta peptide precursor contains consensus double-glycine leader sequence; bacteriocin3440..3607
BACGene447plnc8Aplantaricin NC8 alpha peptide precursor bacteriocin; contains consensus double-glycine leader sequence3622..3765
BACGene448plnc8Cimmunity protein3693..3965
BACGene449plnc8Cputative bacteriocin ORF3-J51; contains consensus double-glycine leader sequence5990..6163
BACGene450plnc8Cputative bacteriocin ORF4-J51; contains consensus double-glycine leader sequence6179..6358
BACGene451plnc8Cunknown ORF5-J51; unknown function6464..6706
BACGene452plnc8Cunknown ORFZ3; unknown function; similar to GenBank Accession Number ABS112156935..7198
BACGene453plnR-likeunknown contains deletion compared to PlnR in CAD63041complement(7165..7278)
BACGene454plnLPlnL immunity proteincomplement(7303..7971)
BACGene455plnLunknown Orf2; similar to Orf2 in GenBank Accession Number AAL778688392..8622
BACGene456plnQplantaricin biosynthesis protein PlnQ8707..8895
BACGene457plnAplantaricin A precursor peptide, induction factor9232..9378
BACGene458plnBhistidine protein kinase PlnB, sensor protein ttg start codon9569..10897
BACGene459plnCresponse regulator PlnC, activator gtg start codon10898..11641
BACGene460plnDresponse regulator PlnD, repressor ttg start codon11760..12503
BACGene461plnIimmunity protein PlnI, membrane-bound protease CAAX familycomplement(12808..13581)
BACGene462plnFbacteriocin precursor peptide PlnF contains consensus double-glycine leader sequencecomplement(13680..13838)
BACGene463plnEbacteriocin precursor peptide PlnE contains consensus double-glycine leader sequencecomplement(13863..14033)
BACGene464plnGbacteriocin ABC transporter ATP-binding and permease protein PlnG14300..16450
BACGene465plnHbacteriocin ABC transporter accessory factor PlnH16466..17842
BACGene466plnSplantaricin biosynthesis protein PlnS17932..18231
BACGene467plnTintegral membrane protein PlnT, membrane-bound protease CAAX family18077..18622
BACGene468plnUintegral membrane protein PlnU, membrane-bound protease CAAX family18689..19357
BACGene469plnVintegral membrane protein PlnV, membrane-bound protease CAAX family19444..20124
BACGene470plnWintegral membrane protein PlnW, membrane-bound protease CAAX family20218..20667
brnQ1napA1plnc8Bplnc8Aplnc8Cplnc8Cplnc8Cplnc8Cplnc8CplnR-likeplnLplnLplnQplnAplnBplnCplnDplnIplnFplnEplnGplnHplnSplnTplnUplnVplnW
Protein sequence
 ........10 ........20 ........30 ........40 ........50 ........60 
          |          |          |          |          |          | 
 MNNLNKFSTL GKSSLSQIEG GSVPTSVYTL GIKILWSAYK HRKTIEKSFN KGFYH

Wheel representation
wheel representation of Plantaricin NC8 β
Protein sequence annotations
Features of Plantaricin NC8 β


FeaturePosition(s)LengthDescription
CHAIN1↔3434
plantaricin NC8 beta peptide.
Feature identifier = PRO_5000063925.
Composition
Hydrophobicity

Composition
Formula C283 H443 N75 O80 S1
Absent amino acids CD
Common amino acids SK
Mass (Da) 6227.02
Net charge +8
Isoelectric point 10.6
Basic residues 10
Acidic residues 2
Hydrophobic residues 16
Polar residues 24
Aliphatic residues 11
Tiny residues 14
Boman Index -74.22
Hydropathy Index -0.41
Aliphatic Index 76.18
Instability Index 52.5 (unstable)
Half Life Mammalian : 30 hour
Yeast : >20 hour
E. coli : >10 hour
Extinction Coefficient 9970 M-1 cm-1
Absorbance 280nm 184.63

Users comments for Plantaricin NC8 β

No comments found

Login or register to submit a comment for Plantaricin NC8 β.