Bacteriocin: uviB
Accession: BAC090
Classification
Class: Unclassified
Genetics
Gene: uviB
Producer and target organisms
Producer Organism: Clostridium perfringens [Gram-positive]
Taxonomy: BacteriaFirmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium
Target organismsUnavailable data
Description
Mode of action:
May have a role in bacteriocin secretion or immunity.
May have a role in bacteriocin secretion or immunity.
Uniprot and PDB links
UniProt Entry: P15936
PDB EntryUnknown
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=CPN50
MEDLINE=88336297;PubMed=2901768;
Garnier T., Cole S.T.
"Complete nucleotide sequence and genetic organization of the bacteriocinogenic plasmid, pIP404, from Clostridium perfringens.", Plasmid 19:134-150(1988).
MEDLINE=88336297;PubMed=2901768;
Garnier T., Cole S.T.
"Complete nucleotide sequence and genetic organization of the bacteriocinogenic plasmid, pIP404, from Clostridium perfringens.", Plasmid 19:134-150(1988).
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=CPN50
MEDLINE=89039249;PubMed=2460717;
Garnier T., Cole S.T.
"Studies of UV-inducible promoters from Clostridium perfringens in vivo and in vitro.", Mol. Microbiol. 2:607-614(1988).
MEDLINE=89039249;PubMed=2460717;
Garnier T., Cole S.T.
"Studies of UV-inducible promoters from Clostridium perfringens in vivo and in vitro.", Mol. Microbiol. 2:607-614(1988).
Loading...
Gene structure
Gene id | Name | Description | Location |
BACGene346 | bcn | bacteriocin | 8389..10206,1 |
BACGene347 | bcn | ORF 4 | complement(900..1496) |
BACGene348 | bcn | ORF 5 | 1832..3052 |
BACGene349 | bcn | ORF 6 | 3809..4309 |
BACGene350 | bcn | ORF 7 | 4347..4514 |
BACGene351 | bcn | ORF 8 | 4919..5488 |
BACGene352 | bcn | ORF 9 | 5514..5870 |
BACGene353 | bcn | ORF 10 | complement(5962..6990) |
BACGene354 | uviAB | bacteriocin | 7301..7858 |
BACGene355 | uviB | bacteriocin | 7939..8133 |
Protein sequence
........10 ........20 ........30 ........40 ........50 | | | | | ILFSYLLFYV LKENSKREDK YQNIIEELTE LLPKIKEDVE DIKEKLNK |
Wheel representation
Protein sequence annotations
Feature | Position(s) | Length | Description |
CHAIN | 1↔48 | 48 | Bacteriocin UviB. Feature identifier = PRO_0000002759. |
Composition
Hydrophobicity
Composition
Formula | C271
H437
N63
O81
|
Absent amino acids | ACGHMW |
Common amino acids | EKL |
Mass (Da) | 5892.62 |
Net charge | -2 |
Isoelectric point | 4.72 |
Basic residues | 9 |
Acidic residues | 11 |
Hydrophobic residues | 17 |
Polar residues | 9 |
Aliphatic residues | 15 |
Tiny residues | 2 |
Boman Index | -97.21 |
Hydropathy Index | -0.61 |
Aliphatic Index | 117.71 |
Instability Index | 66.87 (unstable) |
Half Life |
Mammalian : 20 hour Yeast : 30 min E. coli : >10 hour |
Extinction Coefficient | 4470 M-1 cm-1 |
Absorbance 280nm | 95.11 |
Users comments for uviB
No comments found