Bacteriocin: uviB

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Bacteriocin: uviB

Accession: BAC090

Classification
Class: Unclassified
Genetics
Gene: uviB
Producer and target organisms

Producer Organism: Clostridium perfringens [Gram-positive]

Taxonomy: BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Target organismsUnavailable data

Description
Mode of action:
May have a role in bacteriocin secretion or immunity.
Uniprot and PDB links

UniProt Entry: P15936

PDB EntryUnknown

NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=CPN50
MEDLINE=88336297;PubMed=2901768;
Garnier T., Cole S.T.
"Complete nucleotide sequence and genetic organization of the bacteriocinogenic plasmid, pIP404, from Clostridium perfringens.", Plasmid 19:134-150(1988).
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=CPN50
MEDLINE=89039249;PubMed=2460717;
Garnier T., Cole S.T.
"Studies of UV-inducible promoters from Clostridium perfringens in vivo and in vitro.", Mol. Microbiol. 2:607-614(1988).
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End Note
Reference Manager
BibTeX
Gene structure
genome of uviB

Gene idNameDescriptionLocation
BACGene346bcnbacteriocin8389..10206,1
BACGene347bcnORF 4complement(900..1496)
BACGene348bcnORF 51832..3052
BACGene349bcnORF 63809..4309
BACGene350bcnORF 74347..4514
BACGene351bcnORF 84919..5488
BACGene352bcnORF 95514..5870
BACGene353bcnORF 10complement(5962..6990)
BACGene354uviABbacteriocin7301..7858
BACGene355uviBbacteriocin7939..8133
bcnbcnbcnbcnbcnbcnbcnbcnuviABuviB
Protein sequence
 ........10 ........20 ........30 ........40 ........50 
          |          |          |          |          | 
 ILFSYLLFYV LKENSKREDK YQNIIEELTE LLPKIKEDVE DIKEKLNK

Wheel representation
wheel representation of uviB
Protein sequence annotations
Features of uviB


FeaturePosition(s)LengthDescription
CHAIN1↔4848
Bacteriocin UviB.
Feature identifier = PRO_0000002759.
Composition
Hydrophobicity

Composition
Formula C271 H437 N63 O81
Absent amino acids ACGHMW
Common amino acids EKL
Mass (Da) 5892.62
Net charge -2
Isoelectric point 4.72
Basic residues 9
Acidic residues 11
Hydrophobic residues 17
Polar residues 9
Aliphatic residues 15
Tiny residues 2
Boman Index -97.21
Hydropathy Index -0.61
Aliphatic Index 117.71
Instability Index 66.87 (unstable)
Half Life Mammalian : 20 hour
Yeast : 30 min
E. coli : >10 hour
Extinction Coefficient 4470 M-1 cm-1
Absorbance 280nm 95.11

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