Bacteriocin: Divercin V41

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Bacteriocin: Divercin V41

Accession: BAC077

Classification
Genetics
Gene: dvnV41
Uniprot and PDB links

UniProt Entry: Q9Z4J1

PDB EntryUnknown

NUCLEOTIDE SEQUENCE, STRAIN=V41
MEDLINE=99018833;PubMed=9802025;
Metivier A., Pilet M., Dousset X., Sorokine O., Anglade P., Zagorec M., Piard J., Marion D., Cenatiempo Y., Fremaux C.
"Divercin V41, a new bacteriocin with two disulphide bonds produced by Carnobacterium divergens V41: primary structure and genomic organization.", Microbiol. 144:2837-2844(1998).
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End Note
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BibTeX
Gene structure
genome of Divercin V41

Gene idNameDescriptionLocation
BACGene263orfAhypothetical protein1..384
BACGene264dvnV41divercin V41 anti-Listeria bacteriocin439..639
BACGene265dvnT1ATP-dependent transporter bacteriocin transport713..2884
BACGene266dvnT2putative immunity to divercin V412885..3172
BACGene267dvnIputative immunity to divercin V413347..3640
BACGene268dvnRresponse regulator regulation of divercin V41 production4550..5209
BACGene269dvnKhistidine protein kinase regulation of the divercin V41 production5200..5990
orfAdvnV41dvnT1dvnT2dvnIdvnRdvnK
Protein sequence
 ........10 ........20 ........30 ........40 ........50 
          |          |          |          |          | 
 TKYYGNGVYC NSKKCWVDWG QASGCIGQTV VGGWLGGAIP GKC

Wheel representation
wheel representation of Divercin V41
Protein sequence annotations
Features of Divercin V41


FeaturePosition(s)LengthDescription
CHAIN1↔4343
divercin V41.
Feature identifier = PRO_5000065043.
Composition
Hydrophobicity

Composition
Formula C201 H300 N54 O57 S4
Absent amino acids EFHMR
Common amino acids G
Mass (Da) 4531.9
Net charge +3
Isoelectric point 8.65
Basic residues 4
Acidic residues 1
Hydrophobic residues 12
Polar residues 23
Aliphatic residues 7
Tiny residues 14
Boman Index -11.59
Hydropathy Index -0.12
Aliphatic Index 58.84
Instability Index 5.95 (stable)
Half Life Mammalian : 7.2 hour
Yeast : >20 hour
E. coli : >10 hour
Extinction Coefficient 21220 M-1 cm-1
Absorbance 280nm 505.24

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