Bacteriocin: carnobacteriocin BM1 (Carnobacteriocin B1)

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Bacteriocin: carnobacteriocin BM1 (Carnobacteriocin B1)

Accession: BAC069

Classification
Genetics
Gene: cbnBM1
Producer and target organisms
Uniprot and PDB links

UniProt Entry: P38579

PDB EntryUnknown

NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 19-56, STRAIN=LV17B
MEDLINE=94216339;PubMed=8163526;
Quadri L.E.N., Sailer M., Roy K.L., Vederas J.C., Stiles M.E.
"Chemical and genetic characterization of bacteriocins produced by Carnobacterium piscicola LV17B.", J. Biol. Chem. 269:12204-12211(1994).
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Gene structure
genome of carnobacteriocin BM1 (Carnobacteriocin B1)

Gene idNameDescriptionLocation
BACGene242carnobacteriocin BM1 putative103..288
BACGene243carnobacteriocin BM1 immunity protein putative; 'Putative Immunity protein of Carnobacteriocin BM1'303..569
Protein sequence
 ........10 ........20 ........30 ........40 ........50 
          |          |          |          |          | 
 AISYGNGVYC NKEKCWVNKA ENKQAITGIV IGGWASSLAG MGH

Wheel representation
wheel representation of carnobacteriocin BM1 (Carnobacteriocin B1)
Protein sequence annotations
Features of carnobacteriocin BM1 (Carnobacteriocin B1)


FeaturePosition(s)LengthDescription
CHAIN1↔4343
Bacteriocin carnobacteriocin BM1.
Feature identifier = PRO_0000002735.
DISULFID10↔156Probable.
Composition
Hydrophobicity

Composition
Formula C199 H310 N56 O59 S3
Absent amino acids DFPR
Common amino acids G
Mass (Da) 4545.91
Net charge +3
Isoelectric point 8.76
Basic residues 5
Acidic residues 2
Hydrophobic residues 15
Polar residues 19
Aliphatic residues 8
Tiny residues 15
Boman Index -23.71
Hydropathy Index -0.08
Aliphatic Index 77.21
Instability Index 26.93 (stable)
Half Life Mammalian : 4.4 hour
Yeast : >20 hour
E. coli : >10 hour
Extinction Coefficient 14105 M-1 cm-1
Absorbance 280nm 335.83

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