Bacteriocin: bavaricin-A

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Bacteriocin: bavaricin-A

Accession: BAC064

Classification
Genetics
Gene: Unidentified
Description
Mode of action:
heat stable bacteriocin.
Uniprot and PDB links

UniProt Entry: P80953

PDB EntryUnknown

PROTEIN SEQUENCE, STRAIN=Bavaricus / MI401
MEDLINE=94012314;PubMed=8407671;
Larsen A.G., Vogensen F.K., Josephsen J.
"Antimicrobial activity of lactic acid bacteria isolated from sour doughs: purification and characterization of bavaricin A, a bacteriocin produced by Lactobacillus bavaricus MI401.", J. Appl. Bacteriol. 75:113-122(1993).
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Protein sequence
 ........10 ........20 ........30 ........40 ........50 
          |          |          |          |          | 
 KYYGNGVHXG KHSXTVDWGT AIGNIGNNAA ANXATGXNAG G

Wheel representation
wheel representation of bavaricin-A
Protein sequence annotations
Features of bavaricin-A


FeaturePosition(s)LengthDescription
PEPTIDE1↔4141
Bacteriocin bavaricin-A.
Feature identifier = PRO_0000110573.
UNSURE1K or D.
UNSURE41G or N.
Composition
Hydrophobicity
warning: X is not a standard amino acid. warning: X is not a standard amino acid. warning: X is not a standard amino acid. warning: X is not a standard amino acid. warning: X is not a standard amino acid. warning: X is not a standard amino acid. warning: X is not a standard amino acid. warning: X is not a standard amino acid.

Composition
Formula C154 H224 N50 O48
Absent amino acids CEFLMPQR
Common amino acids G
Mass (Da) 4002.48
Net charge +3
Isoelectric point 9.13
Basic residues 4
Acidic residues 1
Hydrophobic residues 11
Polar residues 21
Aliphatic residues 4
Tiny residues 16
Boman Index -40.8
Hydropathy Index -0.5
Aliphatic Index 47.8
Instability Index 0.19 (stable)
Half Life Mammalian : 1.3 hour
Yeast : 3 min
E. coli : 2 min
Extinction Coefficient 8480 M-1 cm-1
Absorbance 280nm 212

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