Bacteriocin: plantaricin F
Accession: BAC050
Classification
Class: Class IIb
Genetics
Gene: plnF; OrderedLocusNames=lp_0421
Producer and target organisms
Producer Organism: Lactobacillus plantarum [Gram-positive]
Taxonomy: BacteriaFirmicutes
Lactobacillales
Lactobacillaceae
Lactobacillus
Target organismsPediococcus pentosaceus - Lactobacillus plantarum - Lactobacillus casei - Lactobacillus sakei - Lactobacillus viridescens - Pediococcus pentosaceus - Carnobacterium piscicola - Lactobacillus plantarum - Lactobacillus sakei - Pediococcus acidilactici - Lactobacillus curvatus
Uniprot and PDB links
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=C11
MEDLINE=94161498;PubMed=8117074;
Diep B.D., Havarstein L.S., Nissen-Meyer J., Nes F.I.
"The gene encoding plantaricin A, a bacteriocin from Lactobacillus plantarum C11, is located on the same transcription unit as an agr- like regulatory system.", Appl. Environ. Microbiol. 60:160-166(1994).
MEDLINE=94161498;PubMed=8117074;
Diep B.D., Havarstein L.S., Nissen-Meyer J., Nes F.I.
"The gene encoding plantaricin A, a bacteriocin from Lactobacillus plantarum C11, is located on the same transcription unit as an agr- like regulatory system.", Appl. Environ. Microbiol. 60:160-166(1994).
NUCLEOTIDE SEQUENCE [GENOMIC DNA], STRAIN=C11
MEDLINE=96345611;PubMed=8755874;
Diep D.B., Havarstein L.S., Nes I.F.
"Characterization of the locus responsible for the bacteriocin production in Lactobacillus plantarum C11.", J. Bacteriol. 178:4472-4483(1996).
MEDLINE=96345611;PubMed=8755874;
Diep D.B., Havarstein L.S., Nes I.F.
"Characterization of the locus responsible for the bacteriocin production in Lactobacillus plantarum C11.", J. Bacteriol. 178:4472-4483(1996).
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], STRAIN=NCIMB 8826 / WCFS1
MEDLINE=22480296;PubMed=12566566;DOI=10.1073/pnas.0337704100
Kleerebezem M., Boekhorst J., van Kranenburg R., Molenaar D., Kuipers O.P., Leer R., Tarchini R., Peters S.A., Sandbrink H.M., Fiers M.W.E.J., Stiekema W., Klein Lankhorst R.M., Bron P.A., Hoffer S.M., Nierop Groot M.N., Kerkhoven R., De Vries M., Ursing
"Complete genome sequence of Lactobacillus plantarum WCFS1", Proc. Natl. Acad. Sci. U.S.A. 100 (4):1990-5 (2003).
MEDLINE=22480296;PubMed=12566566;DOI=10.1073/pnas.0337704100
Kleerebezem M., Boekhorst J., van Kranenburg R., Molenaar D., Kuipers O.P., Leer R., Tarchini R., Peters S.A., Sandbrink H.M., Fiers M.W.E.J., Stiekema W., Klein Lankhorst R.M., Bron P.A., Hoffer S.M., Nierop Groot M.N., Kerkhoven R., De Vries M., Ursing
"Complete genome sequence of Lactobacillus plantarum WCFS1", Proc. Natl. Acad. Sci. U.S.A. 100 (4):1990-5 (2003).
NUCLEOTIDE SEQUENCE, STRAIN=C11
MEDLINE=96414465;PubMed=8817486;
Diep D.B., Haavarstein S.L., Nes I.F.
"A bacteriocin-like peptide induces bacteriocin synthesis in Lactobacillus plantarum C11.", Mol. Microbiol. 18:631-639(1995).
MEDLINE=96414465;PubMed=8817486;
Diep D.B., Haavarstein S.L., Nes I.F.
"A bacteriocin-like peptide induces bacteriocin synthesis in Lactobacillus plantarum C11.", Mol. Microbiol. 18:631-639(1995).
NUCLEOTIDE SEQUENCE, STRAIN=NC8
PubMed=14973042;DOI=10.1128/JB.186.5.1556-1564.2004
Maldonado A., Jimenez-Diaz R., Ruiz-Barba J.L.
"Induction of plantaricin production in Lactobacillus plantarum NC8 after coculture with specific gram-positive bacteria is mediated by an autoinduction mechanism.", J. Bacteriol. 186:1556-1564(2004).
PubMed=14973042;DOI=10.1128/JB.186.5.1556-1564.2004
Maldonado A., Jimenez-Diaz R., Ruiz-Barba J.L.
"Induction of plantaricin production in Lactobacillus plantarum NC8 after coculture with specific gram-positive bacteria is mediated by an autoinduction mechanism.", J. Bacteriol. 186:1556-1564(2004).
[Ref. 6]
NUCLEOTIDE SEQUENCE, STRAIN=J23
Torres C., Rojo B., Saenz Y., Navarro L., Zarazaga M., Ruiz-Larrea F.
"Detection of a new organization of the pln locus in the oenological Lactobacillus plantarum J23 strain with bacteriocin activity.", Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases.
Torres C., Rojo B., Saenz Y., Navarro L., Zarazaga M., Ruiz-Larrea F.
"Detection of a new organization of the pln locus in the oenological Lactobacillus plantarum J23 strain with bacteriocin activity.", Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases.
[Ref. 7]
NUCLEOTIDE SEQUENCE, STRAIN=J51
Navarro L., Saenz Y., Rojo B., Zarazaga M., Ruiz-Larrea F., Torres C.
"Genetic characterization of the pln locus in the bacteriocin-producer Lactobacillus plantarum strain J51 of wine origin.", Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases.
Navarro L., Saenz Y., Rojo B., Zarazaga M., Ruiz-Larrea F., Torres C.
"Genetic characterization of the pln locus in the bacteriocin-producer Lactobacillus plantarum strain J51 of wine origin.", Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases.
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Protein sequence
........10 ........20 ........30 ........40 | | | | VFHAYSARGV RNNYKSAVGP ADWVISAVRG FIHG |
Wheel representation
3D Structure
Protein sequence annotations
Feature | Position(s) | Length | Description |
CHAIN | 1↔34 | 34 | bacteriocin peptide F. Feature identifier = PRO_5000146715. |
CHAIN | 1↔34 | 34 | bacteriocin peptide PlnF. Feature identifier = PRO_5000063932. |
Composition
Hydrophobicity
Composition
Formula | C169
H253
N51
O44
|
Absent amino acids | CELMQT |
Common amino acids | AV |
Mass (Da) | 3721.74 |
Net charge | +5 |
Isoelectric point | 10.64 |
Basic residues | 6 |
Acidic residues | 1 |
Hydrophobic residues | 15 |
Polar residues | 11 |
Aliphatic residues | 7 |
Tiny residues | 12 |
Boman Index | -40.97 |
Hydropathy Index | 0.04 |
Aliphatic Index | 80.29 |
Instability Index | 7.09 (stable) |
Half Life |
Mammalian : 100 hour Yeast : >20 hour E. coli : >10 hour |
Extinction Coefficient | 8480 M-1 cm-1 |
Absorbance 280nm | 256.97 |
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